Publications

NeuroLines

NeuroBlocks - Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects

Al-Awami, Beyer, Haehn, Kasthuri, Lichtman, Pfister, Hadwiger

IEEE SciVis 2015
 


@ARTICLE{awami_neuroblocks_2015,
author = {A.K. Al-Awami and J. Beyer and D. Haehn and N. Kasthuri and J.W. Lichtman and H. Pfister and M. Hadwiger},
title = {NeuroBlocks - Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects},
journal = {IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE SciVis 2015)},
year = {2015},
volume = {22},
number = {1},
pages = {738--746},
}
  
Large-Scale Visualization Pipeline

State-of-the-Art in GPU-Based Large-Scale Volume Visualization
 

Beyer, Hadwiger, Pfister
 

Computer Graphics Forum, 2015
 


@ARTICLE{beyer_cgf_2015,
author = {J. Beyer and M. Hadwiger and H. Pfister},
title = {State-of-the-Art in GPU-Based
Large-Scale Volume Visualization},
journal = {Computer Graphics Forum, 2015},
year = {2015},
doi = {10.1111/cgf.12605},
}
  
NeuroLines

NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity

Al-Awami, Beyer, Strobelt, Kasthuri, Lichtman, Pfister, Hadwiger

IEEE InfoVis 2014
 


@ARTICLE{awami_neurolines_2014,
author = {A. Al-Awami and J. Beyer and H. Strobelt and N. Kasthuri and J.W. Lichtman and H. Pfister and M. Hadwiger},
title = {NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity},
journal = {IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE InfoVis 2014)},
year = {2014},
volume = {20},
number = {12,
pages = {2369--2378},
}
  
Dojo - web-based proofreading

Design and Evaluation of Interactive Proofreading Tools for Connectomics
 

Haehn, Knowles-Barley, Roberts, Beyer, Kasthuri, Lichtman, Pfister

IEEE SciVis 2014
 


@ARTICLE{haehn_dojo_2014,
author = {D. Haehn and S. Knowles-Barley and M. Roberts and J. Beyer and N. Kasthuri and J.W. Lichtman and H. Pfister},
title = {Design and Evaluation of Interactive Proofreading Tools for Connectomics},
journal = {IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE SciVis 2014)},
year = {2014},
volume = {20},
number = {12},
pages = {2466--2475},
}
  
Large-Scale Visualization Pipeline

A Survey of GPU-Based Large-Scale Volume Visualization
 

Beyer, Hadwiger, Pfister
 

STAR - Eurovis 2014
 


@ARTICLE{beyer_star_2014,
author = {J. Beyer and M. Hadwiger and H. Pfister},
title = {A Survey of GPU-Based Large-Scale Volume Visualization},
journal = {Proceedings EuroVis 2014)},
year = {2014},
}
  
ConnectomeExplorer

ConnectomeExplorer:
Query-Guided Visual Analysis of Large Volumetric Neuroscience Data

Beyer, Al-Awami, Kasthuri, Lichtman, Pfister, Hadwiger

IEEE SciVis 2013
 


@ARTICLE{beyer_vis13,
author = {J. Beyer and A. Al-Awami and N. Kasthuri and J.W. Lichtman and H. Pfister and M. Hadwiger},
title = {ConnectomeExplorer: Query-Guided Visual Analysis of Large Volumetric Neuroscience Data},
journal = {IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE SciVis 2013)},
year = {2013},
volume = {19},
number = {12},
pages = {2868--2877},
}
  
Connectome Visualization

Exploring the Connectome –
Petascale Volume Visualization of Microscopy Data Streams

Beyer, Hadwiger, Al-Awami, Jeong, Kasthuri, Lichtman, Pfister

IEEE Computer Graphics and Applications 2013


@ARTICLE{beyer_cga13,
author = {J. Beyer and M. Hadwiger and A. Al-Awami and W.-K. Jeong and N. Kasthuri and J.W. Lichtman and H. Pfister},
title = {Exploring the Connectome – Petascale Volume Visualization of Microscopy Data Streams},
journal = {IEEE Computer Graphics and Applications},
year = {2013},
volume = {33},
number = {4},
pages = {50--61},
}
Sparse PDF Maps

Sparse PDF Maps for Non-Linear Multi-Resolution Image Operations
 

Hadwiger, Sicat, Beyer, Krüger, Möller

Siggraph Asia 2012
 


@ARTICLE{spdfmaps_hadwiger13,
author = {M. Hadwiger and R. Sicat and J. Beyer and J. Kr{\"u}ger and T. M{\"o}ller},
title = {Sparse PDF Maps for Non-Linear Multi-Resolution Image Operations},
journal = {ACM Transactions on Graphics (Proceedings of Siggraph Asia 2012)},
year = {2012},
volume = {31},
number = {6},
pages = {133:1--133:12},
}
  
Petascale Volume Visualization

Interactive Volume Exploration of Petascale Microscopy Data Streams Using a Visualization-Driven Virtual Memory Approach.

Hadwiger, Beyer, Jeong, Pfister

IEEE SciVis 2012
(Honorable Mention Best Paper)


@ARTICLE{petascalevolren_hadwiger13,
author = {M. Hadwiger and J. Beyer and
W.-K. Jeong and H. Pfister},
title = {Interactive Volume Exploration of Petascale Microscopy Data Streams Using a Visualization-Driven Virtual Memory Approach},
journal = {IEEE Transactions on Visualization
and Computer Graphics (Proceedings of
IEEE SciVis 2012)},
year = {2012},
volume = {18},
number = {2},
pages = {2285--2294},
}
  
Interactive Seismic Interpretation

Interactive Seismic Interpretation with Piecewise Global Energy Minimization
 

Höllt, Beyer, Gschwantner, Muigg, Doleisch, Heinemann, Hadwiger

IEEE Pacific Vis 2011
 


@INPROCEEDINGS{hollt_pv11,
author = {T. H{\"o}llt and J. Beyer and F. Gschwantner and P. Muigg and H. Doleisch and G. Heinemann and M. Hadwiger},
title = {Interactive Seismic Interpretation with Piecewise Global Energy Minimization},
booktitle = {IEEE Pacific Visualization},
year = {2011},
pages = {59--66},
}
  
Ssecrett and Neurotrace

SSECRETT and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Datasets

Jeong, Beyer, Hadwiger, Blue, Law, Vazquez, Reid, Lichtman, Pfister

IEEE Computer Graphics and Applications 2010


@ARTICLE{neurotrace_jeong10,
author = {W.-K. Jeong and J. Beyer and M. Hadwiger and R. Blue and C. Law and A. Vazquez and C. Reid and J. Lichtman and H. Pfister},
title = {SSECRETT and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Datasets},
journal = {IEEE Computer Graphics and Applications},
year = {2010},
pages = {58--70},
}
  
Ssecrett and Neurotrace

Scalable and Interactive Segmentation and Visualization of Neural Processes in EM Datasets

Jeong, Beyer, Hadwiger, Vazquez, Pfister, Whitaker

IEEE Vis 2009
 


@ARTICLE{jeong_vis09,
author = {W.-K. Jeong and J. Beyer and M. Hadwiger and A. Vazquez and H. Pfister and R. Whitaker},
title = {Scalable and Interactive Segmentation and Visualization of Neural Processes in EM Datasets},
journal = {Transactions on Visualization and Computer Graphics (Proceedings of IEEE Vis 2009)},
year = {2009},
volume = {15},
number = {6},
pages = {1505--1514},
}
  
Mixed-Resolution Volume Rendering


 Smooth Mixed-Resolution GPU Volume Rendering
 

Beyer, Hadwiger, Möller, Fritz
 

IEEE International Symposium on Volume and Point-Based Graphics


@INPROCEEDINGS{beyer_vg08,
author = {J. Beyer and M. Hadwiger and T. M{\"o}ller and L. Fritz},
title = {Smooth Mixed-Resolution GPU Volume Rendering},
booktitle = {IEEE International Symposium on Volume and Point-Based Graphics},
year = {2008},
pages = {163--170},
}
  
Multimodal Volume Rendering for Neurosurgery

High-Quality Multimodal Volume Rendering for Preoperative Planning of Neurosurgical Interventions

Beyer, Hadwiger, Wolfsberger, Bühler

IEEE Vis 2007
(Best Applications Paper)
 


@ARTICLE{beyer_vis07,
author = {J. Beyer and M. Hadwiger and S. Wolfsberger and K. B{\"u}hler},
title = {High-Quality Multimodal Volume Rendering for Preoperative Planning of Neurosurgical Interventions},
journal = {Transactions on Visualization and Computer Graphics (Proceedings of IEEE Vis 2007)},
year = {2007},
volume = {13},
number = {6},
pages = {1696--1703},
}